parser of language programs - PMC

Laurence Loewe, Katherine S. Scheuer, Seth A. Keel, Vaibhav Vyas, Ben Liblit, Bret Hanlon, Michael C. Ferris, John Yin, Inês Dutra, Anthony Pietsch, Christine G. Javid, Cecilia L. Moog, Jocelyn Meyer, Jerdon Dresel, Brian McLoone, Sonya Loberger, Arezoo Movaghar, Morgaine Gilchrist‐Scott, Yazeed Sabri, Dave Sescleifer, Ivan Pereda‐Zorrilla, Andrew Zietlow, Rodrigo Smith, Samantha Pietenpol, Jacob Goldfinger, Sarah L. Atzen, Erika Freiberg, Noah P. Waters, Claire Nusbaum, Erik Nolan, Alyssa Hotz, Richard M. Kliman, Ayalew Mentewab, Nathan Fregien, Martha Loewe

Ann N Y Acad Sci. 2017 Jan; 1387(1): 124–144. Published online 2016 Dec 5. doi: 10.1111/nyas.13192

PMCID:: PMC5299481

Article PDF–1.3M

Select item 47625669.

COD::CIF::Parser: an error-correcting CIF parser for the Perl language

Andrius Merkys, Antanas Vaitkus, Justas Butkus, Mykolas Okulič-Kazarinas, Visvaldas Kairys, Saulius Gražulis

J Appl Crystallogr. 2016 Feb 1; 49(Pt 1): 292–301. Published online 2016 Feb 1. doi: 10.1107/S1600576715022396

PMCID:: PMC4762566

Article PDF–1.6M

Select item 389831310.

Composable languages for bioinformatics: the NYoSh experiment

Manuele Simi, Fabien Campagne

PeerJ. 2014; 2: e241. Published online 2014 Jan 2. doi: 10.7717/peerj.241

PMCID:: PMC3898313

Article PDF–2.4M

Select item 366020411.

chem^f: A purely functional chemistry toolkit

Stefan Höck, Rainer Riedl

J Cheminform. 2012; 4: 38. Published online 2012 Dec 20. doi: 10.1186/1758-2946-4-38

PMCID:: PMC3660204

Article PDF–879K

Select item 544669812.

“gnparser”: a powerful parser for scientific names based on Parsing Expression Grammar

Dmitry Y. Mozzherin, Alexander A. Myltsev, David J. Patterson

BMC Bioinformatics. 2017; 18: 279. Published online 2017 May 26. doi: 10.1186/s12859-017-1663-3

PMCID:: PMC5446698

Article PDF–1.4M

Select item 535628013.

A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

Andrey Smelter, Morgan Astra, Hunter N. B. Moseley

BMC Bioinformatics. 2017; 18: 175. Published online 2017 Mar 17. doi: 10.1186/s12859-017-1580-5

PMCID:: PMC5356280

Article PDF–2.3M

Select item 1103603314.

An open-source natural language processing toolkit to support software development: addressing automatic bug detection, code summarisation and code search

Cristian Robledo, Francesca Sallicati, Gaël de Chalendar, Marcos Fernández, Pablo de Castro, Eduardo Martín, Javier Gutiérrez, Yannis Bouachera

Version 2. Open Res Eur. 2022; 2: 37. Published online 2023 Oct 27. doi: 10.12688/openreseurope.14507.2

PMCID:: PMC11036033

Article PDF–4.0M

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Use of General-purpose Negation Detection to Augment Concept Indexing of Medical Documents: A Quantitative Study Using the UMLS

Pradeep G. Mutalik, Aniruddha Deshpande, Prakash M. Nadkarni

J Am Med Inform Assoc. 2001 Nov-Dec; 8(6): 598–609. doi: 10.1136/jamia.2001.0080598

PMCID:: PMC130070

Article PDF–178K

Select item 14582916.

Palingol: a declarative programming language to describe nucleic acids' secondary structures and to scan sequence database.

B Billoud, M Kontic, A Viari

Nucleic Acids Res. 1996 Apr 15; 24(8): 1395–1403. doi: 10.1093/nar/24.8.1395

PMCID:: PMC145829

Summary PDF–125K

Select item 841085217.

QSPcc reduces bottlenecks in computational model simulations

Danilo Tomasoni, Alessio Paris, Stefano Giampiccolo, Federico Reali, Giulia Simoni, Luca Marchetti, Chanchala Kaddi, Susana Neves-Zaph, Corrado Priami, Karim Azer, Rosario Lombardo

Commun Biol. 2021; 4: 1022. Published online 2021 Sep 1. doi: 10.1038/s42003-021-02553-9